PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462901099
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 708aa    MW: 77934.2 Da    PI: 8.2729
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462901099genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.45.9e-1461112256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++ ++ft++q e+Le       +p+++er++L++ +gL+e+qVk+WFqN+R++ k
  462901099  61 KRLHRFTSHQSEILEG---TVEHPNENERQQLSETTGLSENQVKFWFQNKRTQVK 112
                55579**********7...5889****************************9876 PP

2START91.91.3e-292174315206
                HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.......EEEEEEEECTT.. CS
      START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla.......kaetlevissg.. 88 
                ++ q + ++a++++p+W ++s    e +n++ ++q f  +++    ++e+ ra +vv  ++ ++v  l+d    + ++++       + ++++  s+   
  462901099 217 RTVQKFAALASSSSPLWLSVSgdslETLNKMAYVQAFLWQNSamgLKMETTRANAVVMLDSQNVVGFLMDAE-SYGTYFPgimfggtATKVYNWPSDRna 315
                567999*******************************999999*******************9999999999.**********99988888888887799 PP

                ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
      START  89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                   ga +l +ae +++spl p R+ +f+R++++l+ g  +i d+Sv++ + +     + ++++lpSg+li+p +   +k+t +ehv ++++ +h l+++ 
  462901099 316 gydGAMELLTAEVVFPSPLIPaRKCTFLRCCKKLKNGATAIIDISVENVAGN-----FLKCRKLPSGLLIQPIKPDSCKITAIEHVRVDDAGIHDLFKPC 410
                9*************************************************97.....68***************************************** PP

                HHHHHHHHHHHHHHHTXXXXXX CS
      START 185 vksglaegaktwvatlqrqcek 206
                +  +l +ga++wv  + rqc++
  462901099 411 LT-SLLFGARRWVVSMARQCAR 431
                96.5889************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-1447112IPR009057Homeodomain-like
SuperFamilySSF466896.68E-1451112IPR009057Homeodomain-like
PROSITE profilePS5007112.64957114IPR001356Homeobox domain
SMARTSM003895.0E-1058118IPR001356Homeobox domain
CDDcd000867.50E-1359112No hitNo description
PfamPF000461.5E-1161112IPR001356Homeobox domain
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
SuperFamilySSF559612.2E-18209431No hitNo description
SMARTSM002340.0018213431IPR002913START domain
PROSITE profilePS5084818.772216434IPR002913START domain
PfamPF018529.7E-21217431IPR002913START domain
SuperFamilySSF559611.02E-5468642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDFRGGVHDG RSTQSPEIPH ATNGARTLRP NELDLSVSIY SKQIRAEGPS DSPDGSQAKK  60
KRLHRFTSHQ SEILEGTVEH PNENERQQLS ETTGLSENQV KFWFQNKRTQ VKCLKGKEEN  120
YRLKAENVIL NDENKRLKLA KMTITCPSCS GSSTKLPILQ EIERLKLENG WMQQELARLN  180
SELAMNSNAP RHVFQHGSSS GSVVVLQGDQ MLAKIARTVQ KFAALASSSS PLWLSVSGDS  240
LETLNKMAYV QAFLWQNSAM GLKMETTRAN AVVMLDSQNV VGFLMDAESY GTYFPGIMFG  300
GTATKVYNWP SDRNAGYDGA MELLTAEVVF PSPLIPARKC TFLRCCKKLK NGATAIIDIS  360
VENVAGNFLK CRKLPSGLLI QPIKPDSCKI TAIEHVRVDD AGIHDLFKPC LTSLLFGARR  420
WVVSMARQCA RIRDVYHVTN SPMGAGTKWR QIILKMADTL LANYSGGIAG IPAEAWTVQC  480
GKGMEEDVKV VYRRKDDGSN TAVVCASASF LLPVPMRRAF DLLKNNLLRV KWDVLMEGGS  540
VKEEVCVANG VGSDDSISIL HVKHGNVGDT KMILQNSSYD HGNVGDTKMI LQNSSYDVSG  600
SFLVYSSLDD QLIDKIMTPG GDQEMDNVHL YPTGFFLVPI SDAAQTSAAI GETGSTVMTA  660
GFQTPMKLAR GTGLCPRQVS SAIRIMSDRI ENVKDMLVNC HPIFYRVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660716.10.0PREDICTED: homeobox-leucine zipper protein TF1
TrEMBLK3XF210.0K3XF21_SETIT; Uncharacterized protein
STRINGSi000488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.44e-94homeodomain GLABROUS 2